Research



• Research Areas
• Projects
• Research Associates
• Research Students

Research Areas

• Stochastic Algorithms,
• Combinatorial Optimization,
• Computational Biology,
• Algorithms in Bioinformatics,
• Search-Based Software Engineering,
• Job Shop Scheduling,
• Constraint Programming,
• Case Based Reasoning.




Projects

As principal investigator:

• Analysis of Mammographic Images (Royal Society, 2007)
  
• SAPro
  Stochastic Local Search Algorithms for Structural Proteomics (EPSRC Project, 2006 - 2009)
  
• UK-Korea Research Network on Algorithmic Analysis of Biochemical Data (Royal Society, 2004 - 2005)
  
• PACS
  Parallel and Distributed Computing for Job Shop Scheduling
  (Germany / Hong Kong Joint Research Project - DAAD, 1999 - 2002)
  
• X-ray Assistant
  Joint project with Charite Berlin and BerCom GmbH (AiF - Funding Authority for Industry Research, 1997 - 2000)

As co-investigator:
• SEBASE
  Search-Based Software Engineering (EPSRC Project, 2006 - 2011)
  
• EvoTest
  Evolutionary Testing for Complex Systems (EU Project, 2006 - 2009)
  
• Biochemical and Evolutionary Networks (Franco-European Project, 2005 - 2007)
  
• Joint project with Seoul University, Korea (Royal Society, 2005 - 2006)
  
• Joint project with Moscow State University, Russia (Royal Society, 2005 - 2006)
  
• Joint project with Taiwan State University (Royal Society, 2005 - 2006)
  
• Joint project with Ballarat University, Australia (Royal Society, 2005)

Other projects I have been involved in:
• AMORE
  Algorithmic Methods for Optimising the Railways in Europe (EU Research Training Network, 2000 - 2004)
  
• SIMONE
  Simulation of Railway Networks (BMBF Project/Deutsche Bahn AG, 2000 - 2004)
  
• ImPlan
  Intelligent Multi-Resource-Planning
• VERMEIL
  Knowledge-Based Development of Reliable Process Control Systems (BMBF Project/ ELPRO GmbH, 1995 - 1998)
• FABEL
  Case-Based Reasoning for Design Support (BMBF Project, 1990 - 1995)



Research Associates


Xiangchao Gan (2007-2009), now at Wellcome Trust Centre for Human Genetics, Oxford



Research Students


Leonidas Kapsokalivas (2006 - viva 30 Sept 2010)
Thesis: Stochastic Local Search Algorithms for Structural Proteomics

Abu Zafer M Dayem Ullah (2007 - viva 14 July 2011)
Thesis: Optimization Approaches to Protein Structure Prediction and microRNA Target Prediction

Richard Dobson (since 2009)

Xiaochen Wang (since 2009)

Nur Azyyati Ahmad (since 2010)

Ouala Abdelhadi Ep Souki (since 2011)

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