Dr. Kathleen Steinhöfel - Publications

Reader in Computer Science
Algorithms & Bioinformatics Research Group

Journal Publications

Full publication list available on the KCL Pure Portal


Gene Selection Guided by Feature Independence (2013)
H.M. Lai, A. A. Albrecht, K. Steinhöfel,
WAS J Engineering and Technology, 79:1432-1438.


Derivative Scores from Site Accessibility and Ranking of miRNA Target Predictions (2012) Dayem Ullah, A., Sahoo, S., K. Steinhöfel, Albrecht, A. A.
International Journal of Bioinformatics Research and Applications. Sept. , 8, 3-4, p. 171-191.
RAIRO


A Memetic Approach to Protein Structure Prediction in Triangular Lattices (2011)
Islam, D. K., Chetty, M., Ullah, A. D. & Steinhöfel, K.
NEURAL INFORMATION PROCESSING, PT, PT I. Lu, B. L., Zhang, L. Q. & Kwok, J. (eds.).
PART 1 ed. BERLIN: Springer, Vol. 7062 LNCS, p. 625-635.


The Uniform Minimum-Ones 2SAT Problem and its Applications to Haplotype Classification (2010)
Boeckenhauer, H-J., Forisek, M., Oravec, J., Steffen, B., Steinhöfel, K. & Steinova, M.
Rairo-Theoretical Informatics And Applications. 44, 3, p. 363 - 377.


Analysis of Local Search Landscapes for k-SAT Instances (2010)
Albrecht, A., Lane, P. & Steinhöfel, K.
Rairo-Theoretical Informatics And Applications. 44, 3, p. 363 - 377.


Uphill Unfolding of Native Protein Conformations in Cubic Lattices (2010)
Albrecht, A. A., Kapsokalyvas, L. & Steinhöfel, K.
Journal of Computational Science. 1, 1, p. 6 - 12.


A hybrid approach to protein folding problem integrating constraint programming with local search (2010)
Ullah, A. D. & Steinhöfel, K.
BMC Bioinformatics. 11, S1, S39.


A Note on A Priori Estimations of Classification Circuit Complexity (2010)
Albrecht, A. A., Chashkin, A. V., Iliopoulos, C. S., Kasim-Zade, O. M., Lappas, G. & Steinhöfel, K.
FUNDAMENTA INFORMATICAE. 104, 3, p. 201 - 217.


Population-based Local Search for Protein Folding Simulation in the MJ Energy Model and Cubic Lattices (2009)
Kapsokalivas, L., Gan, X., Albrecht, A. A. & Steinhöfel, K.
COMPUTATIONAL BIOLOGY AND CHEMISTRY. 33, 4, p. 283-294.


Uphill Unfolding of Native Protein Conformations (2009)
Kapsokalivas, L., Albrecht, A. & Steinhöfel, K.
Proceedings of German Conference on Bioinformatics (GCB2009), Short Papers and Poster Abstracts. Unknown Publisher, p. 107 - 107.


Stochastic protein folding simulation in the three-dimensional HP-model (2008)
Albrecht, A. A., Skaliotis, A. & Steinhöfel, K.
COMPUTATIONAL BIOLOGY AND CHEMISTRY. 32, 4, p. 248 - 255.


Genetic local search for multicast routing with pre-processing by logarithmic simulated annealing (2008)
Zahrani, M. S., Loomes, M. J., Malcolm, J. A., Ullah, A. Z. M. D., Steinhöfel, K. & Albrecht, A. A.
COMPUTERS AND OPERATIONS RESEARCH. 35, 6, p. 2049 - 2070.


A Local Move Set for Protein Folding in Triangular Lattice Models. (2008)
Bockenhauer, H. J., Dayem Ullah, A. Z. M., Kapsokalivas, L. & Steinhöfel, K.
Algorithms in Bioinformatics. Springer, Vol. 5251 LNBI, p. 369 - 381.


Books

K. Steinhöfel
Stochastic Algorithms in Scheduling Theory
DISKI 218, infix-Verlag, ISBN 3-89601-218-5, PhD Thesis, 1999.

Editorial Work

K. Steinhöfel: Assistant Managing Editor for the Journal of Discrete Algorithms.


J. Daykin, M. Mohamed and K. Steinhöfel (eds.)
London Algorithmics and Stringology 2006
Texts in Algorithms, College Publications, vol. 8, 2007.


C.S. Iliopoulos, K. Park, K. Steinhöfel (eds.)
Algorithms in Bioinformatics
Texts in Algorithms, KCL series, vol. 6, 2006.


Oleg B. Lupanov, Oktay M. Kasim-Zade, Alexander V. Chaskin, K. Steinhöfel (eds.)
Stochastic Algorithms: Foundations and Applications
Springer-Verlag (LNCS 3777), 2005.


A. Albrecht, K. Steinhöfel (eds.)
Stochastic Algorithms: Foundations and Applications
Springer-Verlag (LNCS 2827), 2003.


K. Steinhöfel (ed.)
Stochastic Algorithms: Foundations and Applications
Springer-Verlag (LNCS 2264), 2001.


Conference Papers

2013

L. Day, O. Abdelhadi Ep Souki, A. Albrecht, K. Steinhöfel
MicroRNA Bindings to Meta-stable RNA Secondary Structures.
In Proc: 21st Int. Conf. on Intelligent Systems for Molecular Biology and 12th European Conf. on Computational Biology, poster presentation.
ECCB/ISCB


O. Abdelhadi Ep Souki, S. Sahoo, L. Day, A. Albrecht, K. Steinhöfel
Searching for local minima in RNA folding landscapes.
In: Book of Abstracts, ISCB Africa ASBCB Conf.~on Bioinf. 2013, p.18.
ISCB Africa 2013


R. Dobson, K. Steinhöfel.
SA based Power Efficient FPGA LUT Mapping.
In Proc.: GreenGEC 2013 Workshop, Genetic and Evolutionary Computation Conference
GECCO 2013


2012

Dayem Ullah A., Sahoo S., Steinhöfel K., Albrecht AA.
Derivative scores from site accessibility and ranking of miRNA target predictions.
In: Proc. Tenth Asia Pacific Bioinformatics Conference, Melbourne, 2012.


2011

Islam MK, Chetty M, Dayem Ullah A, Steinhöfel K.
A Memetic Approach to Protein Structure Prediction in Triangular Lattices.
In: Proc. of the International Conference on Neural Information Processing, 2011.
ICONIP'11


R. Dobson, Steinhöfel K.
A Memetic Approach to Protein Structure Prediction in Triangular Lattices.
In: Proc. of the Fifth Multidisciplinary International Scheduling Conference, (journal version subitted), 2011.
MISTA 2011


2010

Abu Zafer M. Dayem Ullah, Kathleen Steinhöfel.
A hybrid approach to protein folding problem integrating constraint programming with local search.
In: Proc. Eighth Asia Pacific Bioinformatics Conference, Bangalore, India, 2010.
APBC 2010


L. Kapsokalivas, K. Steinhöfel.
A Replica Exchange Monte Carlo Algorithm for the Optimization of Secondary Structure Packing in Proteins.
In: Proc. EvoBIO, pp. 146-157, 2010.
EvoBIO 2010

2009

Dayem Ullah A, Steinhöfel K.
Upper Bounds for Foldings in the FCC-HP Protein Model.
In: Computational Structural Bioinformatics Workshop in IEEE International Conference on Bioinformatics and Biomedicine
CSBW 2009


Martin Mann, Mohamed Abou Hamra, Kathleen Steinhöfel, and Rolf Backofen.
Constraint-based local move definitions for lattice protein models including side chains.
In: Proc. of the Fifth Workshop on Constraint Based Methods for Bioinformatics, 2009.
WCB 2009


Dayem Ullah A, Kapsokalivas L, Mann M, Steinhöfel K.
Protein Folding Simulation by Two-Stage Optimization.
In: 4th International Symposium on Intelligence Computation and Applications, vol. 51, CCIS, pp 138-145, Wuhan, China, Springer, 2009.
ISICA 2009


A.A. Albrecht, P.C.R. Lane, K. Steinhöfel.
On the Number of Local Maxima in MAX-SAT Instances.
In: Book of Abstracts: London Algorithmic Workshop, p. 2, London, 2009.
LAW2009


A.A. Albrecht, A.Z.M. Dayem Ullah, L. Kapsokalivas, K. Steinhöfel.
Local Search Methods for Protein Folding Simulation in Lattice Models.
In: Annual Meeting on Structure Prediction (Book of Abstracts), p. 24, London, 2009.
CCP5 2009


L. Kapsokalivas, A.A. Albrecht, K. Steinhöfel.
Uphill Unfolding of Native Protein Conformations in Cubic Lattices.
In: German Conference on Bioinformatics (Book of Abstracts), p. 54, Halle (Saale), 2009.
GCB 2009


Last Update: 06/09/2013