SAPro

Stochastic Local Search Algorithms for Structural Proteomics

Protein Folding in the HP Model

Results

All the benchmarks are taken by Blacewicz et al. and contain 48 amino acids. A hydrophobic (H) amino acid is represented as a black sphere while a polar (P) amino acid is represented as a white sphere.

ID	Sequence	Minimum Energy	View
S1	HPHHPPHHHHPHHHPPHHPPHPHHHPHPHHPPHHPPPHPPPPPPPPHH	-32	Visualize S1
S2	HHHHPHHPHHHHHPPHPPHHPPHPPPPPPHPPHPPPHPPHHPPHHHPH	-34	Visualize S2
S3	PHPHHPHHHHHHPPHPHPPHPHHPHPHPPPHPPHHPPHHPPHPHPPHP	-34	Visualize S3
S4	PHPHHPPHPHHHPPHHPHHPPPHHHHHPPHPHHPHPHPPPPHPPHPHP	-33	Visualize S4
S5	PPHPPPHPHHHHPPHHHHPHHPHHHPPHPHPHPPHPPPPPPHHPHHPH	-32	Visualize S5
S6	HHHPPPHHPHPHHPHHPHHPHPPPPPPPHPHPPHPPPHPPHHHHHHPH	-32	Visualize S6
S7	PHPPPPHPHHHPHPHHHHPHHPHHPPPHPHPPPHHHPPHHPPHHPPPH	-32	Visualize S7
S8	PHHPHHHPHHHHPPHHHPPPPPPHPHHPPHHPHPPPHHPHPHPHHPPP	-31	Visualize S8
S9	PHPHPPPPHPHPHPPHPHHHHHHPPHHHPHPPHPHHPPHPHHHPPPPH	-34	Visualize S9
S10	PHHPPPPPPHHPPPHHHPHPPHPHHPPHPPHPPHHPPHHHHHHHPPHH	-33	Visualize S10

S1 (Min = -32): HPHHPPHHHHPHHHPPHHPPHPHHHPHPHHPPHHPPPHPPPPPPPPHH

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S2 (Min = -34): HHHHPHHPHHHHHPPHPPHHPPHPPPPPPHPPHPPPHPPHHPPHHHPH

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S3 (Min = -34): PHPHHPHHHHHHPPHPHPPHPHHPHPHPPPHPPHHPPHHPPHPHPPHP

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S4 (Min = -33): PHPHHPPHPHHHPPHHPHHPPPHHHHHPPHPHHPHPHPPPPHPPHPHP

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S5 (Min = -32): PPHPPPHPHHHHPPHHHHPHHPHHHPPHPHPHPPHPPPPPPHHPHHPH

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S6 (Min = -32): HHHPPPHHPHPHHPHHPHHPHPPPPPPPHPHPPHPPPHPPHHHHHHPH

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S7 (Min = -32): PHPPPPHPHHHPHPHHHHPHHPHHPPPHPHPPPHHHPPHHPPHHPPPH

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S8 (Min = -31): PHHPHHHPHHHHPPHHHPPPPPPHPHHPPHHPHPPPHHPHPHPHHPPP

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S9 (Min = -34): PHPHPPPPHPHPHPPHPHHHHHHPPHHHPHPPHPHHPPHPHHHPPPPH

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S10 (Min = -33): PHHPPPPPPHHPPPHHHPHPPHPHHPPHPPHPPHHPPHHHHHHHPPHH

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